/usr/share/applications/Terminal.desktop /usr/share/applications/Thunar-bulk-rename.desktop /usr/share/applications/Thunar.desktop /usr/share/applications/mousepad.desktop /usr/share/applications/thunar-settings.desktop /usr/share/applications/xfce4-appfinder.desktop /usr/share/applications/xfce4-mixer.desktop /usr/share/applications/xfce4-notifyd-config.desktop They showed up in KDE menu because OnlyShowIn=XFCE; line was absent in those files. Other apps could be used, but xfce4-notifyd-config and xfce4-mixer may not be needed in KDE or GNOME since KDE and GNOME have their own replacements in my opinion. This could be solved by specifying "OnlyShowIn=XFCE;" or "NotShowIn=KDE;" I leave this problem onto your discretion.
Fixed in git master.