In a fresh XFCE 4.6.2 install (Gentoo IA32), when right-clicking on the desktop, the new top-level menu always appeared instead of the application menu even though the desktop->icons->Icon_type was set to None. (Which is what everybody claimed was the solution for people who wanted to skip the top-level menu and see the application menu on right-click.) Enabling and disabling the four default icons didn't help. After messing around re-building stuff for a couple hours, I finally happened to set "Icon type" to "File/launcher" and then back to "None". That fixed it. The application menu appears on right-click. I've since found various other reports of the same behavior: Just having "Icon type" set to "None" doesn't do the trick. You've got to enable icons, and then subsequently disable them before the application menu shows up. One thing that might be significant is that the first few times I started xfdesktop, it crashed due to an xfconfig/dbus assert failure because I wasn't in the plugdev group -- not that the error messages gave any indication to the source of the problem. That took quite a while to figure out. After I added myself to the plugdev group and restarted dbus, xfdesktop startup up OK, but then I ran into the right-click, application-menu problem.
Thank you for your bug report. This particular bug has already been reported, I'm marking it as a duplicate. *** This bug has been marked as a duplicate of bug 6450 ***