Suppose the layout of my buttons is currently (close) (minimize) (maximize) (title) (menu) Now I bring up the Window Manager Settings. I now see that two buttons are hidden: (stick) (shade) If I move any of the hidden buttons in any way (even if I just move the shade button a bit to the right so that the ordering does not change), the layout in all real windows is changed to (menu) (close) (title) even though the layout on the preferences window remains identical to before. (To reset the layout to conform to what the preferences say, similarly, simply move the buttons in the "Active" frame in some way, even if the move does not change the ordering.)
oki, fixed in CVS. There is another blocking bug though in CVS, so you may not be able to "see" the fix.
Fix verified.